GitHub - tgac-vumc/ACE: Absolute Copy Number Estimation using low-coverage whole genome sequencing data
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Absolute Copy Number Estimation using low-coverage whole genome sequencing data - tgac-vumc/ACE
Accucopy: accurate and fast inference of allele-specific copy number alterations from low-coverage low-purity tumor sequencing data, BMC Bioinformatics
PDF) Genome‑wide copy number analysis of circulating tumor cells in breast cancer patients with liver metastasis
GATK-gCNV: A Rare Copy Number Variant Discovery Algorithm and Its Application to Exome Sequencing in the UK Biobank
GitHub - AdelmanLab/GetGeneAnnotation_GGA
Low-Pass Genome Sequencing: Validation and Diagnostic Utility from 409 Clinical Cases of Low-Pass Genome Sequencing for the Detection of Copy Number Variants to Replace Constitutional Microarray - ScienceDirect
Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
RNAseqCNV: analysis of large-scale copy number variations from RNA-seq data
GitHub - immunogenomics/SCENT: Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
PDF) PCR-Free Shallow Whole Genome Sequencing for Chromosomal Copy Number Detection from Plasma of Cancer Patients Is an Efficient Alternative to the Conventional PCR-Based Approach
Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue, Genome Medicine
Copy Number Variant Detection Using Next-Generation Sequencing - ScienceDirect
Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma, Genome Medicine
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